Our window frame is painted a dark grey and with the new neoprene chalking / seal for the new glass is black. It looks good. Close inspection of the fixed window chalking showed signs of drying out /cracking. It was originally black in color. I don't know what they used before as a sealant but it is drying out. I talked to the glass guy and you can purchase this neoprene chalking from glass companies or body shop supply outfits and reseal yourself.
I can understand if your color on the window frame is a light color the black sealant would stand out. I don't believe there is a selection of colors of caulking. But you never know.